Index

_

__getattr__() (lammps_utils.utils.dummy_tqdm method)

__iter__() (lammps_utils.utils.dummy_tqdm method)

C

catch_default_handler (class in lammps_utils.logging) COLS_ATOMS_LAMMPS_DATA_DTYPE (in module lammps_utils.constants) COLS_BONDS_LAMMPS_DATA_DTYPE (in module lammps_utils.constants)

compute_density() (in module lammps_utils.rdkit) compute_ffv() (in module lammps_utils.rdkit) compute_rg() (in module lammps_utils.rdkit)

D

data2gro() (in module lammps_utils.io) data2pdb() (in module lammps_utils.io)

disable_default_handler() (in module lammps_utils.logging) dummy_tqdm (class in lammps_utils.utils)

E

enable_default_handler() (in module lammps_utils.logging)

F

farthest_node_pair() (in module lammps_utils.graph)

find_main_chains() (in module lammps_utils.rdkit)

G

get_atom_type_masses() (in module lammps_utils.io) get_atom_type_symbols() (in module lammps_utils.io) get_bond_order() (in module lammps_utils.rdkit) get_cell_bounds() (in module lammps_utils.io) get_child_logger() (in module lammps_utils.logging)

get_handler() (in module lammps_utils.logging) get_n_atom_types() (in module lammps_utils.io) get_n_atoms() (in module lammps_utils.io) get_n_bonds() (in module lammps_utils.io) get_root_logger() (in module lammps_utils.logging)

I

is_argument() (in module lammps_utils.utils)

is_installed() (in module lammps_utils.utils)

L

lammps_utils module lammps_utils.constants module lammps_utils.graph module lammps_utils.io module lammps_utils.logging module

lammps_utils.rdkit module lammps_utils.smooth module lammps_utils.utils module load_data() (in module lammps_utils.io) load_dump() (in module lammps_utils.io)

M

MAP_ELEMENT_MASSES (in module lammps_utils.constants) MAP_VDW_RADIUS (in module lammps_utils.constants) module lammps_utils lammps_utils.constants lammps_utils.graph lammps_utils.io lammps_utils.logging lammps_utils.rdkit lammps_utils.smooth lammps_utils.utils

MolFromLAMMPSData() (in module lammps_utils.io) MolFromLAMMPSDump() (in module lammps_utils.io)

N

N_ELEMENTS (in module lammps_utils.constants)

nodes_in_cycles() (in module lammps_utils.graph)

S

savitzky_golay() (in module lammps_utils.smooth)

U

unwrap_molecule_df_under_pbc() (in module lammps_utils.io)

unwrap_molecule_under_pbc() (in module lammps_utils.graph) unwrap_rdkit_mol_under_pbc() (in module lammps_utils.rdkit)

W

wrap_positions_to_cell() (in module lammps_utils.graph)